MolProbity Ramachandran analysis

MolProbity Ramachandran analysis
2VZ8, model 1
General case
180
A 1611 ARG
B 1858
GLU
A
216 ASP
B
A 317
317 ARG
ARG
B 488 SER
A
B 2056 LEU
0
A 985 PHE
A
BCYS
254
1597
CYSASP
AAA
1471
1389
LEU
213GLU
ARG
BBB1548
CYS
820
A 1802 GLU
B 856 CYS
B 1802 GLU
B 1056
1056 SER
A
B 370 GLN
A 238
238 LEU
LEU
B
B 984 GLU
A 857 SER
B
AB1835
1835
LYS
LYS
237
SER
983ALA
ALA
A
848
B
1449
BAB
1982
ASN
A
1225
1735SER
ALA
BB
1225
ALA
HIS
B
A
1110
GLU
A1110
476
476GLU
GLU
GLU
BB
1560
GLN
A 310
310 ASN
ASN
A 613 ALA
Isoleucine and valine
180
B 1979
VALVAL
A 615
B
AB2021
2021
SER
1978SER
ALA
A 60
60 PHE
PHE
B
B 974 ALA
1014 ASP
ASP
BA 1014
Psi
A 854 SER
BA A
387
387
2056
ASN
ASN
LEU
Psi
B
A 2079
2079 VAL
VAL
A 1485 GLU
0
A 1500 ASP
B 669 ASP
1638TRP
SER
BA1932
A 582
LEU
A
A
B 1557
2065 ALA
ASP
A 215 PHE
B
A
839
SER
179
GLU
A 839
179 SER
GLU
B
HIS
A
445
SER
B1467
445
B
A1593
1706
1706
ALA
ALA
B
1596
ASP
B 1800 PHE
B 162
1734
A
1734
ARG
BA
A
SER
LEU
LEU
AB
1801
B
418
GLU
ALA
984
GLU
A1593
418
ALA
B
SER
A A163
163
SER
1800
PHE
BA1491
SER
AA1596
2112ASP
ALA
B 1302 ALA
B 980 ASP
B
A 2078
2078 A
THR
THR
B 1749
1749 ALA
ALA
A 976 VAL
-180
-180
-180
0
Phi
180
Pre-proline
180
Psi
0
Phi
180
Glycine
180
Psi
B 318 GLU
A
0
-180
A 1692 GLY
0
B 1408 THR
B 1303 ASN
A 1303 ASN
A 853 GLY
A 2025
2025 GLY
GLY
B
A 1862
GLYGLY
B 1862
A 255
255 GLY
GLY
B
BA 278
278 ALA
ALA
B 333 GLU
A
B
A 487
487 GLY
GLY
-180
-180
-180
0
Phi
180
Trans proline
180
-180
0
Phi
180
Phi
180
Cis proline
180
818PRO
PRO
B
AA 282
282
PRO
A 1409 PRO
B 1409 PRO
A
B 14 PRO
A 355
PRO
B 1863
B 1865
635 PRO
PROPRO
A
PROA 617
B 636 PRO
A
B 413 PRO
Psi
A 1870 PRO
Psi
1301 PRO
PRO
AB 1301
A 1240 PRO
0
0
BA 2102
2102 PRO
PRO
A 1224 PRO
B 1224 PRO
A
B 1464
1464 PRO
B
A A319
319
PRO
PRO
1649
PRO
B 978 PRO
-180
-180
-180
81.4% (3208/3940) of all residues were in favored (98%) regions.
96.1% (3786/3940) of all residues were in allowed (>99.8%) regions.
There were 154 outliers (phi, psi):
A 14 PRO (-26.4, 113.4)
A 60 PHE (174.6, 137.3)
A 162 SER (-68.8, -81.9)
A 2065 ASP (-31.7, -39.6)
A 2078 THR (-74.0, -152.4)
A 2079 VAL (-162.4, 69.7)
A 2102 PRO (-86.7, -47.6)
A 2112 ALA (-72.4, -103.3)
B 14 PRO (-25.8, 112.7)
B 60 PHE (173.4, 136.8)
A 163 SER (42.9, -87.6)
A 179 GLU (1.3, -68.3)
A 215 PHE (87.8, -49.8)
A 216 ASP (-40.8, 158.9)
A 237 SER (-69.7, 31.1)
A 238 LEU (-163.6, -6.1)
A 254 ASP (-24.8, 104.9)
A 255 GLY (-43.9, -119.8)
A 278 ALA (11.3, -103.1)
A 282 PRO (-34.7, 162.7)
A 310 ASN (-54.3, -0.9)
A 317 ARG (52.2, 178.3)
A 318 GLU (-80.7, 82.0)
A 319 PRO (-45.9, -80.6)
A 333 GLU (51.5, -123.6)
A 355 PRO (-50.8, 104.8)
A 387 ASN (168.1, 108.7)
A 413 PRO (-116.6, 86.8)
A 418 ALA (-47.6, -86.0)
A 445 SER (-38.4, -74.8)
A 476 GLU (-57.6, 12.0)
A 487 GLY (-62.1, -155.2)
A 488 SER (52.9, 170.7)
A 582 LEU (-25.9, -30.0)
A 613 ALA (-47.5, -8.7)
A 615 VAL (-32.9, 176.7)
A 617 PRO (-45.3, 100.6)
A 818 PRO (-30.5, 166.5)
A 839 SER (-1.0, -66.6)
A 848 ALA (-70.4, 23.8)
A 853 GLY (-176.8, -64.9)
A 854 SER (165.0, 176.2)
A 857 SER (-68.8, 40.1)
A 976 VAL (-162.1, -159.7)
A 984 GLU (52.6, -86.0)
A 985 PHE (100.1, 110.0)
A 1014 ASP (-27.7, 136.6)
A 1056 SER (-178.5, 78.9)
A 1110 GLU (-64.0, 13.7)
A 1224 PRO (-6.7, -50.2)
A 1225 ALA (-65.2, 17.1)
A 1240 PRO (-65.7, 25.5)
A 1301 PRO (-46.5, 57.0)
A 1303 ASN (109.6, -50.4)
A 1389 LEU (-53.5, 100.2)
A 1409 PRO (-32.7, 145.7)
A 1464 PRO (-22.8, -63.2)
A 1471 CYS (-56.5, 100.3)
A 1485 GLU (142.9, 62.7)
A 1500 ASP (57.1, -2.9)
A 1557 ALA (-33.7, -35.9)
A 1593 LEU (-53.6, -82.2)
A 1596 ASP (-76.5, -101.6)
A 1597 CYS (-46.9, 103.1)
A 1611 ARG (-42.4, 172.0)
A 1638 SER (-33.8, -24.7)
A 1649 PRO (-37.0, -83.2)
A 1692 GLY (38.3, 79.0)
A 1706 ALA (-50.8, -78.5)
A 1734 ARG (-64.2, -81.8)
A 1735 HIS (-62.3, 17.6)
A 1749 ALA (-38.7, -153.6)
A 1800 PHE (62.3, -89.0)
A 1801 GLU (-60.7, -85.6)
A 1802 GLU (-42.2, 85.2)
A 1835 LYS (-69.2, 32.9)
A 1862 GLY (-26.7, -111.9)
A 1865 PRO (-102.5, 99.4)
A 1870 PRO (-112.5, 49.2)
A 2021 SER (168.1, 148.3)
A 2025 GLY (-60.5, -97.5)
A 2056 LEU (179.8, 108.8)
B 162 SER (-67.9, -82.9)
B 163 SER (42.4, -86.4)
B 179 GLU (0.9, -67.1)
B 213 ARG (-52.8, 97.6)
B 238 LEU (-164.1, -8.0)
B 254 ASP (-23.7, 104.2)
B 255 GLY (-43.7, -120.1)
B 278 ALA (9.5, -102.9)
B 282 PRO (-34.7, 162.2)
B 310 ASN (-54.4, -1.3)
B 317 ARG (52.9, 178.1)
B 318 GLU (-79.9, 82.7)
B 319 PRO (-46.6, -80.2)
B 333 GLU (52.8, -122.1)
B 370 GLN (-177.0, 4.1)
B 387 ASN (167.0, 108.3)
B 413 PRO (-115.2, 86.5)
B 418 ALA (-47.5, -85.9)
B 445 SER (-36.8, -75.3)
B 476 GLU (-58.3, 11.3)
B 487 GLY (-63.1, -155.1)
B 488 SER (53.1, 171.2)
B 635 PRO (-100.2, 101.4)
B 636 PRO (-29.9, 87.7)
B 669 ASP (162.5, -17.3)
B 820 GLU (-57.9, 93.9)
B 839 SER (-1.1, -66.8)
B 856 CYS (8.1, 79.9)
B 974 ALA (57.2, 141.4)
B 978 PRO (-55.4, -114.3)
B 980 ASP (-9.1, -117.2)
B 983 ALA (-63.6, 27.1)
B 984 GLU (-59.7, 47.4)
B 1014 ASP (-29.0, 135.9)
B 1056 SER (-176.4, 79.8)
B 1110 GLU (-64.9, 13.7)
B 1224 PRO (-3.9, -58.2)
B 1225 ALA (-62.2, 17.0)
B 1301 PRO (-43.6, 59.7)
B 1302 ALA (-77.0, -121.6)
B 1303 ASN (-122.4, -25.5)
B 1408 THR (-98.4, 0.9)
B 1409 PRO (-107.3, 136.3)
B 1449 SER (-69.0, 22.1)
B 1464 PRO (-20.0, -64.2)
B 1467 HIS (-41.0, -73.3)
B 1491 SER (57.8, -91.1)
B 1548 CYS (-60.8, 94.9)
B 1560 GLN (-56.2, 1.9)
B 1593 LEU (-53.6, -82.2)
B 1596 ASP (-52.9, -79.3)
B 1706 ALA (-50.8, -78.1)
B 1734 ARG (-62.8, -80.2)
B 1735 HIS (-61.9, 16.6)
B 1749 ALA (-35.9, -155.0)
B 1800 PHE (43.5, -79.7)
B 1802 GLU (-60.9, 69.5)
B 1835 LYS (-70.7, 32.7)
B 1858 GLU (-38.2, 160.6)
B 1862 GLY (-4.5, -113.6)
B 1863 PRO (-30.0, 102.6)
B 1932 TRP (-40.4, -25.6)
B 1978 ALA (171.8, 146.9)
B 1979 VAL (-53.2, 177.5)
B 1982 ASN (-68.4, 19.1)
B 2021 SER (167.7, 150.3)
B 2025 GLY (-60.5, -98.2)
B 2056 LEU (-179.6, 108.6)
B 2065 ASP (-30.7, -39.3)
B 2078 THR (-74.2, -152.8)
B 2079 VAL (-162.1, 70.3)
B 2102 PRO (-88.4, -47.9)
0
http://kinemage.biochem.duke.edu
Phi
180
-180
0
Lovell, Davis, et al. Proteins 50:437 (2003)