MolProbity Ramachandran analysis

MolProbity Ramachandran analysis
3P9D, model 1
General case
180
E
M11
462
462
B
JARG
ARG
202
202 LYS
LYS
C
52
MET
IAB
11
ASP
ASP
JK
142
142
ASN
ASN
P
H
322
LYS
P
H 322
122
122LYS
LEU
LEU
K
C 16 THR
K
CF
N 321
353
353LYS
LEU
LEU
F
N 343
343 LEU
LEU
F
N 167
167 THR
THR
B
JGLN
246
246
IA 508
508
PHE
PHE
LYS
LYS
C
265
LYS
P
H 373
373K
GLN
IAE
M265
265
438
438ASP
ASP
ARG
ARG
P
HB
J 343
343
327
327ARG
SER
ARG
SER
B
J 307
30713
GLU
GLU
P
H
13
LEU
LEU
518
518ASN
LEU
LEU
L
D
G
OIA188
188
362
ASN
TYR
G
O 224
250
LEU
E
M
376
376
THR
THR
G
O SER
479
IA 367
367
SERTYR
G
O
PHE
IA
337
LEU
LEU
K
C 337
G
O
258
256
GLN
ASNN
F 486 THR
THR
G
O 337 THR
N 49
467
467
LEU
LEU
P
HF
49
CYS
CYS
E
M
369
369 LEU
LEU
Psi
Isoleucine and valine
180
H 467
378
378ILE
ILE
ILE
B
JP
467
ILE
G
O 62 ILE
Psi
P
H 150
150 ILE
ILE
B
J 35
35 SER
SER
IA 55
55ASP
ASP
L
D 99 ALA
ALA
C 67
36 ARG
G
OK
P
H 187
187ALA
SER
SER
L
D
95
SER
F
N 95
24
24SER
THR
THR
0
O190
495
PHE
E
MG
190
SER
SER
B
J 184
184 LEU
LEU
IA 56
56ASP
ASP
K
CJB 252
370
370TYR
ARG
ARG
E
M 507
507 ILE
ILE
P
H 484
484
VAL
F
N VAL
138
138 ILE
ILE
F
N 489
489 VAL
VAL
P
H 147
147 VAL
VAL
0
E
MG
402
402 LYS
LYS
O
ASP
B
J 301
301190
LEU
LEU
F
N 188
188 ASN
ASN
IA
74
74ASP
ASP
B
J 478
478
THR
THR
F
N 183
183 ASP
ASP
E
M 351
351 LEU
LEU
P
H 483
483 ASN
ASN
B
J 372
372 ALA
ALA
L
D 431
431 SER
SER
B
JALA
16
16 GLU
GLU
K
CG
30
M
147
147
ALA
O
428
SER
K
C
256
GLU
P
HK
CE
356
P
H
356
460
178
178
GLU
GLU
ALA
LEU
LEU
F
N
298
298
GLN
GLN
B
JK
C454
144
50
SER
SER
ASP
L
DK
L
D382
382
485
485
K
CF
ALA
ALA
19
ARG
ARG
GLN
C
ARG
N50
460
460
LYS
LYS
L
D 427
427 LYS
LYS
L
D 294
294 ARG
ARG
K
C 303 ASP
G
O 487 ASN
L
D 474
474 GLU
GLU
-180
IA 94
94ILE
ILE
G
O 63 SER
B
J 220
220 ASN
ASN
J 470
470 SER
SER
F
N 160
160 THR
THR B
K
C 490 LYS
0
Phi
P
H 490
490 VAL
VAL
B
J 55 ILE
ILE
-180
0
Phi
M 254
254 MET
MET
E
IA
77
77HIS
HIS
121
121
HIS
HIS
G
O IA368
CYS
180
Glycine
180
E
M 251
251 HIS
HIS
E
M 440
440 VAL
VAL
-180
180
Pre-proline
180
F
NP
512
512
VAL
VAL
P
H
284
284
ILE
ILE
146
VAL
146
VAL
HH502
458
458
VAL
VAL
OP
B
J 88
88G
VAL
VAL VAL
E
M 167
167 ASP
ASP
J 15
15 ALA
ALA
B
J 185
185 LYS
LYSB
L
D 205
205 ASP
ASP
G
O 478 TRP
ID
A
335
335
ALA
ALA
O
213
LEU
L
143
143
SER
SER
P
HG
233
233
GLU
GLU
-180
B
J 165
165 ILE
ILE
IA 376
376GLY
GLY
B
J E
M
323
323
386
386
GLY
GLY
GLY
GLY
F
N 412
412 ILE
ILE
M
E 347
347 GLY
GLY
Psi
Psi
0
0
F
N 333
333 GLY
GLY
E
M 36
36 GLY
GLY
B
J 371
371 GLY
GLY
G
O 45 GLY
P
H 486
486 GLU
GLU
B
J 293
293 TYR
TYR
G
OE
M528
493
493
GLY
GLY
GLY
IA 292
292GLY
GLY
IA 22
22GLY
GLY
N 490
490 GLY
GLY
G
O 412 GLY F
-180
K
C 50 ASP
-180
-180
E
M 274
274 CYS
CYS
0
Phi
180
Trans proline
180
-180
0
Phi
180
Phi
180
Cis proline
180
IA 267
267PRO
PRO
K
C 249 PRO
K
C 142 PRO
E
M
IA 199
279
199
279PRO
PRO
PRO
PRO
Psi
Psi
K
C 410 PRO
0
0
F
N 204
204 PRO
PRO
B
J 117
117 PRO
PRO
P
H 460
460
48
48 PRO
PRO
PRO
PRO
L
D 17
17 PRO
PRO
G
O 210
46
46 PRO
PRO
K
C
PRO
IAP
549
PRO
PRO
H549
324
324
PRO
PRO
P
H 66 PRO
PRO
-180
-180
-180
82.9% (6885/8302) of all residues were in favored (98%) regions.
96.2% (7986/8302) of all residues were in allowed (>99.8%) regions.
There were 316 outliers (phi, psi):
A 11 ASP (47.8, 176.5)
A 22 GLY (43.7, -104.7)
A 55 ASP (-71.5, 30.8)
A 56 ASP (38.4, 25.0)
A 74 ASP (100.2, -16.2)
A 77 HIS (92.8, 152.0)
A 94 ILE (-148.3, -91.7)
A 121 HIS (79.1, 126.5)
A 199 PRO (-38.6, 103.6)
A 265 ASP (160.6, 146.6)
A 267 PRO (-40.3, 160.8)
A 292 GLY (176.9, -81.6)
A 335 ALA (-60.7, -171.9)
A 337 LEU (-54.9, 96.6)
A 367 SER (64.8, 98.4)
A 376 GLY (67.0, 142.1)
A 508 LYS (106.3, 153.8)
A 518 LEU (176.6, 122.5)
A 549 PRO (-75.4, -156.8)
B 5 ILE (81.3, -175.7)
B 15 ALA (79.5, -143.3)
B 16 GLU (-25.4, -71.1)
B 35 SER (-62.2, 52.8)
B 50 SER (-52.1, -82.7)
B 88 VAL (-82.6, -84.8)
B 117 PRO (-77.0, -54.7)
B 142 ASN (50.6, 173.2)
B 165 ILE (-18.4, -39.2)
B 184 LEU (100.7, 31.5)
B 185 LYS (32.3, -145.3)
B 202 LYS (86.8, 179.6)
B 220 ASN (84.8, -163.8)
B 246 PHE (92.8, 153.1)
B 293 TYR (-110.5, -59.0)
B 301 LEU (99.5, 0.3)
B 307 GLU (52.6, 124.7)
B 323 GLY (63.5, 132.8)
B 327 SER (67.3, 140.6)
B 370 ARG (178.1, 38.1)
B 371 GLY (-25.1, -42.4)
B 372 ALA (-26.4, -51.9)
B 467 ILE (60.4, 115.1)
B 470 SER (159.6, -166.8)
B 478 THR (101.8, -20.0)
C 16 THR (-14.2, 147.7)
C 19 GLN (-45.4, -83.3)
C 30 ALA (-52.1, -73.2)
C 36 ARG (-63.2, 18.2)
C 50 ASP (-61.4, -175.7)
C 52 MET (54.1, 177.8)
C 142 PRO (-99.0, 115.2)
C 144 ASP (-51.2, -82.2)
C 210 PRO (-45.7, -97.8)
C 249 PRO (-111.4, 131.9)
C 252 TYR (174.3, 39.5)
C 256 GLU (-47.0, -77.7)
C 258 GLN (-53.5, 95.6)
C 265 LYS (92.5, 151.7)
C 303 ASP (93.3, -122.9)
C 321 LYS (-25.5, 140.3)
C 410 PRO (-61.3, 11.7)
C 454 ARG (-61.9, -85.6)
C 460 ALA (-56.8, -79.0)
C 490 LYS (49.3, -173.9)
D 9 ALA (-69.3, 23.9)
D 17 PRO (-44.9, -80.9)
D 95 SER (-54.3, -2.6)
D 143 SER (-60.8, -173.1)
D 188 ASN (170.9, 119.8)
D 205 ASP (-64.0, -147.3)
D 294 ARG (67.2, -95.5)
D 382 ALA (-68.1, -83.4)
D 427 LYS (-65.8, -94.0)
D 431 SER (-23.4, -60.7)
D 474 GLU (-177.4, -145.9)
D 485 ARG (-60.4, -83.8)
E 36 GLY (172.5, 26.2)
E 147 ALA (-54.7, -75.0)
E 167 ASP (149.1, -131.2)
E 190 SER (86.7, 37.3)
E 251 HIS (48.4, 176.8)
E 254 MET (94.1, 157.0)
E 274 CYS (85.8, -178.2)
E 279 PRO (-38.6, 103.4)
E 347 GLY (-16.9, 118.7)
E 351 LEU (-18.4, -27.8)
E 369 LEU (-25.4, 77.1)
E 376 THR (-55.5, 100.8)
E 386 GLY (71.0, 132.3)
E 402 LYS (102.7, 5.9)
E 438 ARG (163.8, 146.1)
E 440 VAL (-85.8, -159.6)
E 462 ARG (55.0, 179.7)
E 493 GLY (-50.7, -80.5)
E 507 ILE (40.0, 28.5)
F 24 THR (-53.6, -4.5)
F 138 ILE (82.6, 11.8)
F 160 THR (94.5, -169.6)
F 167 THR (167.4, 173.4)
F 183 ASP (-43.9, -21.9)
F 188 ASN (99.5, -8.7)
F 204 PRO (-40.4, -9.9)
F 298 GLN (-47.1, -81.5)
F 333 GLY (17.3, 91.2)
F 343 LEU (-24.7, 129.7)
F 353 LEU (-20.7, 138.9)
F 412 ILE (172.6, 131.8)
F 460 LYS (-43.5, -86.0)
F 467 LEU (-57.2, 82.8)
F 486 THR (11.0, 92.4)
F 489 VAL (92.3, 0.9)
F 490 GLY (-10.3, -145.0)
F 512 VAL (-58.2, -71.7)
G 45 GLY (-19.1, -57.0)
G 46 PRO (-45.1, -95.0)
G 62 ILE (-165.4, 117.4)
G 63 SER (176.2, -159.3)
G 67 ALA (-66.6, 13.9)
G 190 ASP (111.8, 4.3)
G 213 LEU (-52.5, -172.9)
G 224 PHE (-42.7, 97.1)
G 250 LEU (-37.1, 101.0)
G 256 ASN (-42.9, 95.5)
G 337 THR (58.7, 91.9)
G 362 TYR (173.0, 119.2)
G 368 CYS (70.2, 122.1)
G 412 GLY (-65.8, -148.9)
G 428 SER (-49.7, -75.5)
G 478 TRP (-59.8, -165.4)
G 479 TYR (82.8, 99.1)
G 487 ASN (-178.9, -123.7)
G 495 PHE (96.3, 41.7)
G 502 VAL (-58.1, -80.8)
G 528 GLY (-58.6, -80.8)
H 6 PRO (-56.9, -166.7)
H 13 LEU (64.9, 122.7)
H 48 PRO (-58.1, -74.7)
H 49 CYS (-64.9, 78.8)
H 122 LEU (-48.4, 167.6)
H 146 VAL (-48.4, -76.0)
H 147 VAL (63.5, -13.2)
H 150 ILE (-61.3, 85.2)
H 178 LEU (-46.7, -78.4)
H 187 SER (-62.9, 9.2)
H 233 GLU (-58.4, -176.5)
H 284 ILE (-47.4, -72.2)
H 322 LYS (-50.2, 168.7)
H 324 PRO (-69.5, -160.1)
H 343 ARG (63.9, 140.2)
H 356 GLU (-59.1, -78.8)
H 373 GLN (62.1, 150.8)
H 378 ILE (62.8, 119.0)
H 458 VAL (-55.2, -77.3)
H 460 PRO (-58.4, -74.2)
H 483 ASN (8.4, -40.2)
H 484 VAL (60.7, 13.0)
0
Phi
180
-180
0
H 486 GLU (-144.2, -54.8)
H 490 VAL (-162.4, -151.6)
I 11 ASP (47.8, 176.5)
I 22 GLY (43.7, -104.7)
I 55 ASP (-71.6, 30.8)
I 56 ASP (38.4, 25.1)
I 74 ASP (100.1, -16.2)
I 77 HIS (92.8, 151.9)
I 94 ILE (-148.2, -91.7)
I 121 HIS (79.1, 126.5)
I 199 PRO (-38.6, 103.7)
I 265 ASP (160.6, 146.7)
I 267 PRO (-40.3, 160.8)
I 292 GLY (176.9, -81.6)
I 335 ALA (-60.7, -172.0)
I 337 LEU (-54.8, 96.6)
I 367 SER (64.8, 98.4)
I 376 GLY (67.0, 142.1)
I 508 LYS (106.3, 153.8)
I 518 LEU (176.6, 122.5)
I 549 PRO (-75.3, -156.8)
J 5 ILE (81.3, -175.7)
J 15 ALA (79.6, -143.3)
J 16 GLU (-25.5, -71.1)
J 35 SER (-62.3, 52.7)
J 50 SER (-52.0, -82.7)
J 88 VAL (-82.6, -84.8)
J 117 PRO (-76.9, -54.7)
J 142 ASN (50.6, 173.2)
J 165 ILE (-18.5, -39.1)
J 184 LEU (100.6, 31.5)
J 185 LYS (32.3, -145.3)
J 202 LYS (86.7, 179.7)
J 220 ASN (84.8, -163.9)
J 246 PHE (92.9, 153.1)
J 293 TYR (-110.5, -58.9)
J 301 LEU (99.5, 0.3)
J 307 GLU (52.7, 124.7)
J 323 GLY (63.5, 132.9)
J 327 SER (67.3, 140.6)
J 370 ARG (178.0, 38.2)
J 371 GLY (-25.1, -42.4)
J 372 ALA (-26.3, -52.0)
J 467 ILE (60.5, 115.0)
J 470 SER (159.6, -166.8)
J 478 THR (101.8, -20.0)
K 16 THR (-14.2, 147.7)
K 19 GLN (-45.3, -83.3)
K 30 ALA (-52.1, -73.2)
K 36 ARG (-63.2, 18.2)
K 50 ASP (-61.3, -175.7)
K 52 MET (54.1, 177.8)
K 142 PRO (-99.0, 115.2)
K 144 ASP (-51.1, -82.1)
K 210 PRO (-45.7, -97.8)
K 249 PRO (-111.4, 131.9)
K 252 TYR (174.3, 39.5)
K 256 GLU (-46.9, -77.7)
K 258 GLN (-53.5, 95.7)
K 265 LYS (92.6, 151.7)
K 303 ASP (93.2, -122.9)
K 321 LYS (-25.4, 140.3)
K 410 PRO (-61.4, 11.7)
K 454 ARG (-61.8, -85.6)
K 460 ALA (-56.9, -78.9)
K 490 LYS (49.2, -173.9)
L 9 ALA (-69.3, 23.9)
L 17 PRO (-44.9, -80.9)
L 95 SER (-54.3, -2.6)
L 143 SER (-60.9, -173.1)
L 188 ASN (171.0, 119.9)
L 205 ASP (-64.1, -147.3)
L 294 ARG (67.2, -95.5)
L 382 ALA (-68.2, -83.4)
L 427 LYS (-65.8, -94.1)
L 431 SER (-23.5, -60.6)
L 474 GLU (-177.4, -145.9)
L 485 ARG (-60.4, -83.8)
M 36 GLY (172.5, 26.2)
M 147 ALA (-54.7, -74.9)
M 167 ASP (149.1, -131.2)
M 190 SER (86.6, 37.3)
M 251 HIS (48.4, 176.7)
M 254 MET (94.0, 157.0)
M 274 CYS (85.9, -178.2)
M 279 PRO (-38.6, 103.4)
M 347 GLY (-17.1, 118.8)
M 351 LEU (-18.4, -27.8)
M 369 LEU (-25.4, 77.1)
M 376 THR (-55.4, 100.7)
M 386 GLY (71.0, 132.3)
M 402 LYS (102.8, 5.8)
M 438 ARG (163.8, 146.1)
M 440 VAL (-85.9, -159.5)
M 462 ARG (55.0, 179.7)
M 493 GLY (-50.6, -80.5)
M 507 ILE (39.9, 28.5)
N 24 THR (-53.6, -4.4)
N 138 ILE (82.7, 11.8)
N 160 THR (94.5, -169.7)
N 167 THR (167.3, 173.4)
N 183 ASP (-43.9, -21.9)
N 188 ASN (99.5, -8.6)
N 204 PRO (-40.4, -10.0)
N 298 GLN (-47.2, -81.5)
N 333 GLY (17.3, 91.3)
N 343 LEU (-24.7, 129.6)
N 353 LEU (-20.6, 138.9)
N 412 ILE (172.6, 131.8)
N 460 LYS (-43.4, -86.0)
N 467 LEU (-57.1, 82.8)
N 486 THR (11.0, 92.4)
N 489 VAL (92.3, 1.0)
N 490 GLY (-10.2, -145.1)
N 512 VAL (-58.2, -71.7)
O 45 GLY (-19.2, -57.0)
O 46 PRO (-44.9, -95.1)
O 62 ILE (-165.4, 117.3)
O 63 SER (176.2, -159.3)
O 67 ALA (-66.5, 13.8)
O 190 ASP (111.9, 4.3)
O 213 LEU (-52.5, -172.9)
O 224 PHE (-42.7, 97.1)
O 250 LEU (-37.2, 101.0)
O 256 ASN (-42.9, 95.5)
O 337 THR (58.6, 91.8)
O 362 TYR (172.9, 119.2)
O 368 CYS (70.2, 122.1)
O 412 GLY (-65.8, -148.9)
O 428 SER (-49.6, -75.5)
O 478 TRP (-59.7, -165.3)
O 479 TYR (82.8, 99.1)
O 487 ASN (-178.9, -123.7)
O 495 PHE (96.3, 41.7)
O 502 VAL (-58.1, -80.8)
O 528 GLY (-58.6, -80.8)
P 6 PRO (-56.9, -166.7)
P 13 LEU (64.8, 122.8)
P 48 PRO (-58.1, -74.7)
P 49 CYS (-64.8, 78.7)
P 122 LEU (-48.4, 167.6)
P 146 VAL (-48.3, -76.1)
P 147 VAL (63.6, -13.1)
P 150 ILE (-61.4, 85.3)
P 178 LEU (-46.6, -78.4)
P 187 SER (-63.0, 9.3)
P 233 GLU (-58.5, -176.5)
P 284 ILE (-47.5, -72.2)
P 322 LYS (-50.1, 168.7)
P 324 PRO (-69.5, -160.2)
P 343 ARG (63.9, 140.2)
P 356 GLU (-59.2, -78.8)
P 373 GLN (62.0, 150.8)
P 378 ILE (62.8, 119.0)
P 458 VAL (-55.2, -77.3)
P 460 PRO (-58.4, -74.2)
P 483 ASN (8.2, -40.1)
P 484 VAL (60.7, 13.0)
P 486 GLU (-144.2, -54.8)
P 490 VAL (-162.3, -151.6)
http://kinemage.biochem.duke.edu
Lovell, Davis, et al. Proteins 50:437 (2003)